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Evidence · Trials

Run-in periods and the population they select

DO
dr_okonkwoTL4 Moderator11 Sep 2025#1

On the subject in the title: Run-in periods and the population they select Working notes rather than a conclusion.

Session topic: PIONEER 6 (N Engl J Med, 2019). Please read it before posting; the discussion is much better when everyone has.

The question I would like us to start with is what the trial set out to estimate, rather than what it found. Once that is on the table we can talk about whether the design could have answered it, and only then about the numbers.

Specific things I would like covered: the population and how far it generalises, how discontinuation was handled, whether the comparator was a fair one, and what the absolute rather than relative effect looks like.

I will summarise at the end and the summary will feed the relevant digest page.

6 likes 11mo
EV
e.vargaTL2 Moderator17 Sep 2025#2

Open-label design: unblinded trials admit expectation effects. For weight-loss trials where one arm loses substantial weight and the other does not, complete blinding is impossible anyway. The unblinded nature is a limitation worth noting.

10 likes 10mo
AB
a.batistaTL2 Moderator21 Sep 2025#3

post #2 is right about the mechanism and I think understates the practical bit.

Dropout is information: high dropout rates can indicate tolerability problems or lower efficacy than the summary suggests. Where the analysis handled dropouts matters. An intention-to-treat analysis with many dropouts can give a smaller apparent effect than per-protocol analysis.

23 likes 10mo
AN
a.novakTL2 Moderator25 Sep 2025#4
e.varga, post #2: Open-label design: unblinded trials admit expectation effects. For weight-loss trials where one arm loses substantial weight and the other does not, complete blinding is impossible anyway. The unblinded nature is a limitation worth noting. Go to post

Worth separating two things that post #2 runs together.

Population narrowness: most trials in this class enrolled fairly specific groups. Baseline body mass index ranges, exclusion of renal disease, exclusion of certain comorbidities, all narrow the population. Applying point estimates to someone well outside the range is an extrapolation.

0 likes in reply to #2 10mo
LG
lc_gradientTL3Analytical chemist29 Sep 2025#5

Picking up post #2: that is the part I would want checked first.

Generalisability: the enrolled population was selected in ways that matter. Entry criteria, run-in periods, and the simple fact that people who agree to a multi-year trial differ from people who do not, all narrow the population. That is how internal validity is bought, at the cost of external validity.

6 likes 10mo
DV
d.vukovicTL2 Moderator2 Oct 2025#6

Absolute numbers, not just relative: a 30% relative reduction tells you the ratio but not the practical magnitude. The event rate in each arm and the difference between them tells you how many people benefit.

16 likes 10mo
RA
r.aldana_pharmdTL4Pharmacist5 Oct 2025 · edited#7
e.varga, post #2: Open-label design: unblinded trials admit expectation effects. For weight-loss trials where one arm loses substantial weight and the other does not, complete blinding is impossible anyway. The unblinded nature is a limitation worth noting. Go to post

The estimand: what the trial set out to estimate. Two trials can be identical in structure but estimate different things by using different handling rules for people who stop taking the drug. Treatment-policy and hypothetical approaches are both legitimate but answer different questions.

31 likes in reply to #2 10mo
SO
s.okaforTL2 Moderator8 Oct 2025#8
a.novak, post #4: Worth separating two things that post #2 runs together. Population narrowness: most trials in this class enrolled fairly specific groups. Baseline body mass index ranges, exclusion of renal disease, exclusion of certain comorbidities, all narrow the population. Applying point estimates to someone well outside the range is an… Go to post

On post #4 — agreed on the reasoning, with one qualification.

Two things before anyone answers the substance.

First, the context in the first post is clear and specific. Second, the question is framed so that an answer can actually address it. Both are the norm here and both matter more than they sound.

0 likes in reply to #4 10mo
NN
n.norgaardTL2 Moderator11 Oct 2025#9

This follows post #6 rather than contradicting it.

Intent-to-treat versus per-protocol: ITT includes everyone assigned regardless of whether they took the drug. Per-protocol includes only those who completed it as intended. The two can give substantially different results.

10 likes 10mo
RG
r.girardTL2 Moderator14 Oct 2025#10

I read post #8 twice before replying, because I had assumed the opposite.

Risk of bias: structured appraisal of internal validity. Key things to assess: randomisation method (was it truly random or could someone predict the next assignment), concealment (could randomisation be subverted), blinding (who was blinded and why or why not), completeness of outcome reporting.

22 likes 9mo
CA
c.adebayoTL2 Moderator17 Oct 2025 · edited#11

Surrogate endpoints: an endpoint that is not the outcome that matters but is measured as a stand-in. HbA1c is a surrogate for long-term glucose control and the short-term complications it prevents. Weight loss is a surrogate for metabolic health and long-term outcomes. Surrogates are useful but not identical to the endpoint that matters.

2 likes 9mo
HK
h.karlsenTL2 Moderator20 Oct 2025#12

Confounding in observational data: a third variable can explain an apparent association. In a randomised trial, randomisation balances unknown confounders. In observational data, observed confounders can be adjusted for but unknown ones cannot.

0 likes 9mo
SC
so.cardosoTL2 Moderator23 Oct 2025#13

I read post #11 twice before replying, because I had assumed the opposite.

Multiplicity and multiple comparisons: if a trial tests many hypotheses, the chance of a false positive on at least one by random chance increases. This is why pre-specification of the primary endpoint matters and why secondary endpoints are weaker evidence.

21 likes 9mo
SD
s.dziedzicTL2 Moderator25 Oct 2025#14
c.adebayo, post #11: Surrogate endpoints: an endpoint that is not the outcome that matters but is measured as a stand-in. HbA1c is a surrogate for long-term glucose control and the short-term complications it prevents. Weight loss is a surrogate for metabolic health and long-term outcomes. Surrogates are useful but not identical to the endpoint that matters. Go to post

This follows post #11 rather than contradicting it.

Multiplicity and multiple comparisons: if a trial tests many hypotheses, the chance of a false positive on at least one by random chance increases. This is why pre-specification of the primary endpoint matters and why secondary endpoints are weaker evidence.

9 likes in reply to #11 9mo
TV
t.vasquezTL4 Moderator28 Oct 2025#15
r.girard, post #10: I read post #8 twice before replying, because I had assumed the opposite. Risk of bias: structured appraisal of internal validity. Key things to assess: randomisation method (was it truly random or could someone predict the next assignment), concealment (could randomisation be subverted), blinding (who was blinded and why or why not),… Go to post

Having read the exchange above, I think I was wrong earlier in this topic and I want to say so plainly rather than quietly editing.

The correction was fair and I had been repeating something I had not checked carefully enough.

1 like in reply to #10 9mo
VB
va.baptistaTL2 Moderator31 Oct 2025#16

post #15 answers the question as asked. The question underneath it is different.

Open-label design: unblinded trials admit expectation effects. For weight-loss trials where one arm loses substantial weight and the other does not, complete blinding is impossible anyway. The unblinded nature is a limitation worth noting.

0 likes 9mo
CR
compounding_ruthTL4Pharmacist2 Nov 2025#17

Coming back to post #15, because the follow-up matters more than the original answer.

Generalisability: the enrolled population was selected in ways that matter. Entry criteria, run-in periods, and the simple fact that people who agree to a multi-year trial differ from people who do not, all narrow the population. That is how internal validity is bought, at the cost of external validity.

15 likes 9mo
JA
j.asanteTL2 Moderator5 Nov 2025#18

Population narrowness: most trials in this class enrolled fairly specific groups. Baseline body mass index ranges, exclusion of renal disease, exclusion of certain comorbidities, all narrow the population. Applying point estimates to someone well outside the range is an extrapolation.

5 likes 9mo
SS
system_suitabilityTL3Analytical chemist7 Nov 2025#19

Worth separating two things that post #15 runs together.

Confounding in observational data: a third variable can explain an apparent association. In a randomised trial, randomisation balances unknown confounders. In observational data, observed confounders can be adjusted for but unknown ones cannot.

9 likes 9mo
HD
h.delgadoTL2 Moderator10 Nov 2025#20

I disagree with the reply above, and I think the disagreement is substantive rather than terminological.

The distinction being drawn does not survive when you look at the published data for this specific question. I would be glad to be shown wrong on this, because the version I am arguing against is more convenient.

2 likes 9mo
VK
v.krastevTL2 Moderator12 Nov 2025#21

post #20 answers the question as asked. The question underneath it is different.

The estimand: what the trial set out to estimate. Two trials can be identical in structure but estimate different things by using different handling rules for people who stop taking the drug. Treatment-policy and hypothetical approaches are both legitimate but answer different questions.

26 likes 8mo
MA
m.achebeTL2 Moderator14 Nov 2025#22
s.dziedzic, post #14: This follows post #11 rather than contradicting it. Multiplicity and multiple comparisons: if a trial tests many hypotheses, the chance of a false positive on at least one by random chance increases. This is why pre-specification of the primary endpoint matters and why secondary endpoints are weaker evidence. Go to post

Intent-to-treat versus per-protocol: ITT includes everyone assigned regardless of whether they took the drug. Per-protocol includes only those who completed it as intended. The two can give substantially different results.

0 likes in reply to #14 8mo
NP
n.petrovTL2 Moderator17 Nov 2025#23
h.delgado, post #20: I disagree with the reply above, and I think the disagreement is substantive rather than terminological. The distinction being drawn does not survive when you look at the published data for this specific question. I would be glad to be shown wrong on this, because the version I am arguing against is more convenient. Go to post

Risk of bias: structured appraisal of internal validity. Key things to assess: randomisation method (was it truly random or could someone predict the next assignment), concealment (could randomisation be subverted), blinding (who was blinded and why or why not), completeness of outcome reporting.

2 likes in reply to #20 8mo
BN
b.nilsenTL2 Moderator19 Nov 2025#24

Coming back to post #22, because the follow-up matters more than the original answer.

Absolute numbers, not just relative: a 30% relative reduction tells you the ratio but not the practical magnitude. The event rate in each arm and the difference between them tells you how many people benefit.

8 likes 8mo
MR
m.rasmussenTL2 Moderator22 Nov 2025#25

post #24 is right about the mechanism and I think understates the practical bit.

Surrogate endpoints: an endpoint that is not the outcome that matters but is measured as a stand-in. HbA1c is a surrogate for long-term glucose control and the short-term complications it prevents. Weight loss is a surrogate for metabolic health and long-term outcomes. Surrogates are useful but not identical to the endpoint that matters.

0 likes 8mo
ZO
z.onwukaTL2 Moderator24 Nov 2025#26

Worth separating two things that post #22 runs together.

Two things before anyone answers the substance.

First, the context in the first post is clear and specific. Second, the question is framed so that an answer can actually address it. Both are the norm here and both matter more than they sound.

0 likes 8mo
VS
v.sjobergTL2 Moderator26 Nov 2025 · edited#27
v.krastev, post #21: post #20 answers the question as asked. The question underneath it is different. The estimand: what the trial set out to estimate. Two trials can be identical in structure but estimate different things by using different handling rules for people who stop taking the drug. Treatment-policy and hypothetical approaches are both legitimate… Go to post

Dropout is information: high dropout rates can indicate tolerability problems or lower efficacy than the summary suggests. Where the analysis handled dropouts matters. An intention-to-treat analysis with many dropouts can give a smaller apparent effect than per-protocol analysis.

4 likes in reply to #21 8mo
TV
t.vasquezTL4 Moderator28 Nov 2025#28

Population narrowness: most trials in this class enrolled fairly specific groups. Baseline body mass index ranges, exclusion of renal disease, exclusion of certain comorbidities, all narrow the population. Applying point estimates to someone well outside the range is an extrapolation.

12 likes 8mo
TT
taper_tableTL3Regular1 Dec 2025#29

Confounding in observational data: a third variable can explain an apparent association. In a randomised trial, randomisation balances unknown confounders. In observational data, observed confounders can be adjusted for but unknown ones cannot.

0 likes 8mo
MA
m.agyemanTL2 Moderator3 Dec 2025#30
z.onwuka, post #26: Worth separating two things that post #22 runs together. Two things before anyone answers the substance. First, the context in the first post is clear and specific. Second, the question is framed so that an answer can actually address it. Both are the norm here and both matter more than they sound. Go to post

On post #26 — agreed on the reasoning, with one qualification.

Surrogate endpoints: an endpoint that is not the outcome that matters but is measured as a stand-in. HbA1c is a surrogate for long-term glucose control and the short-term complications it prevents. Weight loss is a surrogate for metabolic health and long-term outcomes. Surrogates are useful but not identical to the endpoint that matters.

1 like in reply to #26 8mo