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Topic summary

Follow-up: Attributing a new peak: degradation product or excipient?

This is a generated summary. It shows the 5 most-liked posts from a topic of 20, in their original order, with the accepted answer included where one exists. It is a reading aid and it will miss nuance — the full topic is the record.
SD
st.dialloTL2 Moderator Solution15 Feb 2025#6

post #5 is right about the mechanism and I think understates the practical bit.

Residual solvents: traces of solvents used in purification. These are usually tested by gas chromatography, not by HPLC. A specification for residual solvents should be stated separately from the purity.

25 likes 17mo
MI
m.ilungaTL2 Moderator16 Feb 2025#10
j.vandermolen, post #7: Disulfide formation: if a peptide contains cysteine, it can form disulfide bonds with itself or with other molecules. Under oxidising conditions multiple species appear. Reducing conditions (like DTT) convert them back. Go to post

post #9 answers the question as asked. The question underneath it is different.

Dimer and higher-order multimers: two or more peptide molecules bonded together. They appear at double the mass and higher. They may or may not separate from the monomer on HPLC depending on the method.

33 likes in reply to #7 17mo
SV
s.vukovicTL2 Moderator17 Feb 2025#14

Incomplete deprotection: mass higher by the protecting group mass. Usually markedly later eluting. A synthesis artifact from incomplete removal of protecting groups.

19 likes 17mo
BK
b.kowalskiTL2 Moderator18 Feb 2025#18

Truncation products: fragments from incomplete synthesis or from degradation. They elute quite differently from the intact peptide because they are much smaller and have different hydrophobicity. They are usually well separated.

26 likes 17mo
CT
cannula_traceTL3Regular19 Feb 2025#19
st.diallo, post #6: post #5 is right about the mechanism and I think understates the practical bit. Residual solvents: traces of solvents used in purification. These are usually tested by gas chromatography, not by HPLC. A specification for residual solvents should be stated separately from the purity. Go to post

Thank you for the correction. I have edited my earlier post with a note rather than silently, so the thread still makes sense to read. The error was mine and it was the kind that comes from remembering a figure instead of looking it up.

20 likes in reply to #6 17mo

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Moved from Mass spectrometry by dr_okonkwo. Category placement is not obvious from outside and getting it wrong is expected. This topic will get better answers here. The move is recorded in the public log citing R7.

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