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Analytics · Mass spectrometry

Reading an MS report that only gives you a single number — the long version

TT
taper_tableTL3Regular21 Dec 2024#1

Reading an MS report that only gives you a single number — the long version — setting out what I have, and where I think it stops being reliable.

I would like to understand what this number means before I repeat it anywhere.

A PeptideMeter report on a semaglutide lot gives 99.1% purity. The supplier certificate for the same lot states 97.7%. Both documents name a reversed-phase method; neither states the same gradient.

My question is not "who is right". It is: given that those two figures were produced by different methods, what is the largest difference I should expect from method alone, and at what point does a gap stop being explainable that way?

25 likes 19mo
R
RidgewayTL3Regular12 Jan 2025 · edited#2

Picking up the opening post: that is the part I would want checked first.

For anyone arriving from a search: the marked solution above is the direct answer, and the replies underneath it add the caveats that make it safe to use.

4 likes 18mo
AK
an.kirchnerTL2 Moderator28 Jan 2025#3
taper_table, post #1: Reading an MS report that only gives you a single number — the long version — setting out what I have, and where I think it stops being reliable. I would like to understand what this number means before I repeat it anywhere. A PeptideMeter report on a semaglutide lot gives 99.1% purity. The supplier certificate for the same lot states… Go to post

What mass accuracy establishes: the measured mass is consistent with a specific composition. What it does not establish: purity, sequence order, stereochemistry, or the absence of an isobaric species. Every one of those requires something else.

0 likes in reply to #1 18mo
Moved from HPLC & UHPLC by owen.brady. Category placement is not obvious from outside and getting it wrong is expected. This topic will get better answers here. The move is recorded in the public log citing R7.

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