The Peptide CommonsEst. May 2024
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Intersection · Analytics × counter-ion content

Analytics topics tagged counter-ion content

Topics in Analytics carrying the tag counter-ion content. Acetate or TFA content and its effect on measured peptide mass.

49 topics

TopicParticipantsRepliesViewsActivity
Named, unnamed and unspecified impurities as regulatory categories — the long version
Named, unnamed and unspecified impurities as regulatory categories — the long version — setting out what I have, and where I think it stops being reliable. Two reports on the same lot, and I would like help…
PNTDHFEFJR+112 120 7.6k 5h
Isotope patterns and why the monoisotopic peak is not the tallest — does this still hold?
Isotope patterns and why the monoisotopic peak is not the tallest — does this still hold? — that is the question, and I have not found it answered plainly anywhere I have looked. Asking about Isotope patterns…
PODBTD 2 4.6k 7h
Deletion sequences: expected mass shifts by residue — the long version
On the subject in the title: Deletion sequences: expected mass shifts by residue — the long version Working notes rather than a conclusion. Deletion sequences keeps being re-asked here and I think that is…
DBNASCPWEH+21 25 6.9k 10h
Endotoxin and why it is a separate question from purity — what changed since
On the subject in the title: Endotoxin and why it is a separate question from purity — what changed since Working notes rather than a conclusion. What changes if the standard account of Endotoxin is wrong? I…
JSPRMVMDEM+78 91 1k 10h
About the Impurities & related substances category
Deletion sequences, oxidation, deamidation, aggregates, residual solvents, and counter-ion content. This post is a community wiki: any member at trust level 3 or above can edit it, and every edit is recorded…
BNHSDSSDBW+6 10 50k 15h
Second pass at: What a 2 ppm match establishes, and what it does not
Second pass at: What a 2 ppm match establishes, and what it does not — setting out what I have, and where I think it stops being reliable. Two things I would like separated before anyone answers on 2 ppm…
BSNKSTMGMM+44 49 8.1k 1d
Mass error in ppm: the arithmetic and the caveat — a second dataset
On the subject in the title: Mass error in ppm: the arithmetic and the caveat — a second dataset Working notes rather than a conclusion. Working through the identity arithmetic and I would like it checked.…
HKGVDWONW+20 24 1.7k 1d
Impurity thresholds: where the common numbers come from
Impurity thresholds: where the common numbers come from — setting out what I have, and where I think it stops being reliable. I have spent a fortnight trying to pin impurity thresholds down and I want to set…
MRDNLAPOBP+11 15 825 2d
Racemisation and why it is invisible to a mass measurement — what changed since
Racemisation and why it is invisible to a mass measurement — what changed since Writing it up because I had to work it out twice and would rather nobody else did. What changes if the standard account of…
TVBVCCBIN+11 15 42k 16d
Deamidation and the close-eluting pair it produces — the long version
Posting this under the heading it deserves: Deamidation and the close-eluting pair it produces — the long version Everything below is what sits behind that. A narrow question about Deamidation, deliberately…
KMMNOAHR 3 347 24d
MS/MS sequence confirmation: what it costs and when it is worth it — what changed since
Posting this under the heading it deserves: MS/MS sequence confirmation: what it costs and when it is worth it — what changed since Everything below is what sits behind that. Two reports on the same lot, and…
ACCCNDVVB+34 39 21k 1mo
Second pass at: Where impurities in solid-phase peptide synthesis come from
Second pass at: Where impurities in solid-phase peptide synthesis come from Writing it up because I had to work it out twice and would rather nobody else did. Impurities in solid-phase peptide synthesis, from…
GHDBEVLSMP+4 8 7.2k 1mo
Racemisation and why it is invisible to a mass measurement
Posting this under the heading it deserves: Racemisation and why it is invisible to a mass measurement Everything below is what sits behind that. A question about racemisation that I think has a definite…
NTKCTDOPA+120 127 41k 1mo
Residual solvents and scavengers: what is looked for — what changed since
Residual solvents and scavengers: what is looked for — what changed since — setting out what I have, and where I think it stops being reliable. What changes if the standard account of Residual solvents and…
ESOFIASLC+37 41 7k 2mo
Named, unnamed and unspecified impurities as regulatory categories
On the subject in the title: Named, unnamed and unspecified impurities as regulatory categories Working notes rather than a conclusion. Two reports on the same lot, and I would like help deciding whether they…
DWZONPBNVK+10 14 504 3mo
[2026 update] Charge states for a 4 kDa peptide, worked through
On the subject in the title: Charge states for a 4 kDa peptide, worked through Working notes rather than a conclusion. Working through the identity arithmetic and I would like it checked. semaglutide has a…
DBBIATNAL+116 135 31k 3mo
Impurity thresholds: where the common numbers come from — what changed since
Posting this under the heading it deserves: Impurity thresholds: where the common numbers come from — what changed since Everything below is what sits behind that. What changes if the standard account of…
NAKBMM 2 61k 3mo
Deletion sequences: expected mass shifts by residue
Deletion sequences: expected mass shifts by residue — setting out what I have, and where I think it stops being reliable. Deletion sequences keeps being re-asked here and I think that is because the answer is…
SCBBCN 2 59 3mo
Adducts: sodium, potassium, and the peak you did not expect — does this still hold?
Asking directly, because I could not find a straight answer: Adducts: sodium, potassium, and the peak you did not expect — does this still hold? Adducts keeps being re-asked here and I think that is because…
KBZYLVCETV+113 119 1.7k 3mo
Endotoxin and why it is a separate question from purity
Endotoxin and why it is a separate question from purity Writing it up because I had to work it out twice and would rather nobody else did. A question about endotoxin that I think has a definite answer, unlike…
DNSGMB 2 22k 4mo
Second pass at: Counter-ion content and its effect on measured mass
Second pass at: Counter-ion content and its effect on measured mass Writing it up because I had to work it out twice and would rather nobody else did. Something about Counter-ion content does not reconcile…
SORSLAFFOV 4 16k 4mo
Second pass at: Where impurities in solid-phase peptide synthesis come from
Posting this under the heading it deserves: Second pass at: Where impurities in solid-phase peptide synthesis come from Everything below is what sits behind that. Working notes on impurities in solid-phase…
SABJBPJSMS+47 51 3.3k 5mo
Mass error in ppm: the arithmetic and the caveat
Mass error in ppm: the arithmetic and the caveat Writing it up because I had to work it out twice and would rather nobody else did. Working through the identity arithmetic and I would like it checked.…
KCCIAMCDBV+108 125 1.5k 5mo
Trifluoroacetate content and its consequences
Trifluoroacetate content and its consequences — setting out what I have, and where I think it stops being reliable. What changes if the standard account of trifluoroacetate content is wrong? I ask because I…
AIRDRVHFAV+123 134 31k 5mo
Aggregates and why a purity assay may miss them entirely
Aggregates and why a purity assay may miss them entirely Writing it up because I had to work it out twice and would rather nobody else did. I would like to disagree carefully with the settled view on…
RVIDSSVKFP+61 69 2.9k 6mo
Second pass at: MALDI versus ESI for a quick identity check
Second pass at: MALDI versus ESI for a quick identity check Writing it up because I had to work it out twice and would rather nobody else did. Something about MALDI versus ESI does not reconcile and I would…
MALKO 2 18k 7mo
[2026 update] Why mass spectrometry cannot tell you about an epimer
Why mass spectrometry cannot tell you about an epimer — that is the question, and I have not found it answered plainly anywhere I have looked. Working through the identity arithmetic and I would like it…
GTAPFP 2 1k 8mo
Revisiting: Aggregates and why a purity assay may miss them entirely
Posting this under the heading it deserves: Revisiting: Aggregates and why a purity assay may miss them entirely Everything below is what sits behind that. I would like to disagree carefully with the settled…
LVNCOLNVMS+48 53 918 8mo
High-resolution MS on aggregates and what it can see
Posting this under the heading it deserves: High-resolution MS on aggregates and what it can see Everything below is what sits behind that. Something about high-resolution does not reconcile and I would like…
CRGISCBPEC+117 123 6.5k 8mo
Particulates in a reconstituted solution: identifying the likely source
Posting this under the heading it deserves: Particulates in a reconstituted solution: identifying the likely source Everything below is what sits behind that. Something about particulates does not reconcile…
SCNECCYMRM+15 19 13k 9mo